Seppo Linnainmaa

Seppo Linnainmaa

Seppo Ilmari Linnainmaa (born 28 September 1945) is a Finnish mathematician and computer scientist known for creating the modern version of backpropagation. == Biography == He was born in Pori. He received his MSc in 1970 and introduced a reverse mode of automatic differentiation in his MSc thesis. In 1974 he obtained the first doctorate ever awarded in computer science at the University of Helsinki. In 1976, he became Assistant Professor. From 1984 to 1985 he was Visiting Professor at the University of Maryland, USA. From 1986 to 1989 he was Chairman of the Finnish Artificial Intelligence Society. From 1989 to 2007, he was Research Professor at the VTT Technical Research Centre of Finland. He retired in 2007. == Backpropagation == Explicit, efficient error backpropagation in arbitrary, discrete, possibly sparsely connected, neural networks-like networks was first described in Linnainmaa's 1970 master's thesis, albeit without reference to NNs, when he introduced the reverse mode of automatic differentiation (AD), in order to efficiently compute the derivative of a differentiable composite function that can be represented as a graph, by recursively applying the chain rule to the building blocks of the function. Linnainmaa published it first, following Gerardi Ostrowski who had used it in the context of certain process models in chemical engineering some five years earlier, but didn't publish.

PCVC Speech Dataset

The PCVC (Persian Consonant Vowel Combination) Speech Dataset is a Modern Persian speech corpus for speech recognition and also speaker recognition. The dataset contains sound samples of Modern Persian combination of vowel and consonant phonemes from different speakers. Every sound sample contains just one consonant and one vowel So it is somehow labeled in phoneme level. This dataset consists of 23 Persian consonants and 6 vowels. The sound samples are all possible combinations of vowels and consonants (138 samples for each speaker). The sample rate of all speech samples is 48000 which means there are 48000 sound samples in every 1 second. Every sound sample starts with consonant then continues with vowel. In each sample, in average, 0.5 second of each sample is speech and the rest is silence. Each sound sample ends with silence. All of sound samples are denoised with "Adaptive noise reduction" algorithm. Compared to Farsdat speech dataset and Persian speech corpus it is more easy to use because it is prepared in .mat data files. Also it is more based on phoneme based separation and all samples are denoised. == Contents == The corpus is downloadable from its Kaggle web page, and contains the following: .mat data files of sound samples in a 23630000 matrix, in which 23 is number of consonants, 6 is the number of vowels and 30000 is the length of sound sample.

Structured prediction

Structured prediction or structured output learning is an umbrella term for supervised machine learning techniques that involves predicting structured objects, rather than discrete or real values. Similar to commonly used supervised learning techniques, structured prediction models are typically trained by means of observed data in which the predicted value is compared to the ground truth, and this is used to adjust the model parameters. Due to the complexity of the model and the interrelations of predicted variables, the processes of model training and inference are often computationally infeasible, so approximate inference and learning methods are used. == Applications == An example application is the problem of translating a natural language sentence into a syntactic representation such as a parse tree. This can be seen as a structured prediction problem in which the structured output domain is the set of all possible parse trees. Structured prediction is used in a wide variety of domains including bioinformatics, natural language processing (NLP), speech recognition, and computer vision. === Example: sequence tagging === Sequence tagging is a class of problems prevalent in NLP in which input data are often sequential, for instance sentences of text. The sequence tagging problem appears in several guises, such as part-of-speech tagging (POS tagging) and named entity recognition. In POS tagging, for example, each word in a sequence must be 'tagged' with a class label representing the type of word: The main challenge of this problem is to resolve ambiguity: in the above example, the words "sentence" and "tagged" in English can also be verbs. While this problem can be solved by simply performing classification of individual tokens, this approach does not take into account the empirical fact that tags do not occur independently; instead, each tag displays a strong conditional dependence on the tag of the previous word. This fact can be exploited in a sequence model such as a hidden Markov model or conditional random field that predicts the entire tag sequence for a sentence (rather than just individual tags) via the Viterbi algorithm. == Techniques == Probabilistic graphical models form a large class of structured prediction models. In particular, Bayesian networks and random fields are popular. Other algorithms and models for structured prediction include inductive logic programming, case-based reasoning, structured SVMs, Markov logic networks, Probabilistic Soft Logic, and constrained conditional models. The main techniques are: Conditional random fields Structured support vector machines Structured k-nearest neighbours Recurrent neural networks, in particular Elman networks Transformers. === Structured perceptron === One of the easiest ways to understand algorithms for general structured prediction is the structured perceptron by Collins. This algorithm combines the perceptron algorithm for learning linear classifiers with an inference algorithm (classically the Viterbi algorithm when used on sequence data) and can be described abstractly as follows: First, define a function ϕ ( x , y ) {\displaystyle \phi (x,y)} that maps a training sample x {\displaystyle x} and a candidate prediction y {\displaystyle y} to a vector of length n {\displaystyle n} ( x {\displaystyle x} and y {\displaystyle y} may have any structure; n {\displaystyle n} is problem-dependent, but must be fixed for each model). Let G E N {\displaystyle GEN} be a function that generates candidate predictions. Then: Let w {\displaystyle w} be a weight vector of length n {\displaystyle n} For a predetermined number of iterations: For each sample x {\displaystyle x} in the training set with true output t {\displaystyle t} : Make a prediction y ^ {\displaystyle {\hat {y}}} : y ^ = a r g m a x { y ∈ G E N ( x ) } ( w T , ϕ ( x , y ) ) {\displaystyle {\hat {y}}={\operatorname {arg\,max} }\,\{y\in GEN(x)\}\,(w^{T},\phi (x,y))} Update w {\displaystyle w} (from y ^ {\displaystyle {\hat {y}}} towards t {\displaystyle t} ): w = w + c ( − ϕ ( x , y ^ ) + ϕ ( x , t ) ) {\displaystyle w=w+c(-\phi (x,{\hat {y}})+\phi (x,t))} , where c {\displaystyle c} is the learning rate. In practice, finding the argmax over G E N ( x ) {\displaystyle {GEN}({x})} is done using an algorithm such as Viterbi or a max-sum, rather than an exhaustive search through an exponentially large set of candidates. The idea of learning is similar to that for multiclass perceptrons.

Models of DNA evolution

A number of different Markov models of DNA sequence evolution have been proposed. These substitution models differ in terms of the parameters used to describe the rates at which one nucleotide replaces another during evolution. These models are frequently used in molecular phylogenetic analyses. In particular, they are used during the calculation of likelihood of a tree (in Bayesian and maximum likelihood approaches to tree estimation) and they are used to estimate the evolutionary distance between sequences from the observed differences between the sequences. == Introduction == These models are phenomenological descriptions of the evolution of DNA as a string of four discrete states. These Markov models do not explicitly depict the mechanism of mutation nor the action of natural selection. Rather they describe the relative rates of different changes. For example, mutational biases and purifying selection favoring conservative changes are probably both responsible for the relatively high rate of transitions compared to transversions in evolving sequences. However, the Kimura (K80) model described below only attempts to capture the effect of both forces in a parameter that reflects the relative rate of transitions to transversions. Evolutionary analyses of sequences are conducted on a wide variety of time scales. Thus, it is convenient to express these models in terms of the instantaneous rates of change between different states (the Q matrices below). If we are given a starting (ancestral) state at one position, the model's Q matrix and a branch length expressing the expected number of changes to have occurred since the ancestor, then we can derive the probability of the descendant sequence having each of the four states. The mathematical details of this transformation from rate-matrix to probability matrix are described in the mathematics of substitution models section of the substitution model page. By expressing models in terms of the instantaneous rates of change we can avoid estimating a large numbers of parameters for each branch on a phylogenetic tree (or each comparison if the analysis involves many pairwise sequence comparisons). The models described on this page describe the evolution of a single site within a set of sequences. They are often used for analyzing the evolution of an entire locus by making the simplifying assumption that different sites evolve independently and are identically distributed. This assumption may be justifiable if the sites can be assumed to be evolving neutrally. If the primary effect of natural selection on the evolution of the sequences is to constrain some sites, then models of among-site rate-heterogeneity can be used. This approach allows one to estimate only one matrix of relative rates of substitution, and another set of parameters describing the variance in the total rate of substitution across sites. == DNA evolution as a continuous-time Markov chain == === Continuous-time Markov chains === Continuous-time Markov chains have the usual transition matrices which are, in addition, parameterized by time, t {\displaystyle t} . Specifically, if E 1 , E 2 , E 3 , E 4 {\displaystyle E_{1},E_{2},E_{3},E_{4}} are the states, then the transition matrix P ( t ) = ( P i j ( t ) ) {\displaystyle P(t)={\big (}P_{ij}(t){\big )}} where each individual entry, P i j ( t ) {\displaystyle P_{ij}(t)} refers to the probability that state E i {\displaystyle E_{i}} will change to state E j {\displaystyle E_{j}} in time t {\displaystyle t} . Example: We would like to model the substitution process in DNA sequences (i.e. Jukes–Cantor, Kimura, etc.) in a continuous-time fashion. The corresponding transition matrices will look like: P ( t ) = ( p A A ( t ) p A G ( t ) p A C ( t ) p A T ( t ) p G A ( t ) p G G ( t ) p G C ( t ) p G T ( t ) p C A ( t ) p C G ( t ) p C C ( t ) p C T ( t ) p T A ( t ) p T G ( t ) p T C ( t ) p T T ( t ) ) {\displaystyle P(t)={\begin{pmatrix}p_{\mathrm {AA} }(t)&p_{\mathrm {AG} }(t)&p_{\mathrm {AC} }(t)&p_{\mathrm {AT} }(t)\\p_{\mathrm {GA} }(t)&p_{\mathrm {GG} }(t)&p_{\mathrm {GC} }(t)&p_{\mathrm {GT} }(t)\\p_{\mathrm {CA} }(t)&p_{\mathrm {CG} }(t)&p_{\mathrm {CC} }(t)&p_{\mathrm {CT} }(t)\\p_{\mathrm {TA} }(t)&p_{\mathrm {TG} }(t)&p_{\mathrm {TC} }(t)&p_{\mathrm {TT} }(t)\end{pmatrix}}} where the top-left and bottom-right 2 × 2 blocks correspond to transition probabilities and the top-right and bottom-left 2 × 2 blocks corresponds to transversion probabilities. Assumption: If at some time t 0 {\displaystyle t_{0}} , the Markov chain is in state E i {\displaystyle E_{i}} , then the probability that at time t 0 + t {\displaystyle t_{0}+t} , it will be in state E j {\displaystyle E_{j}} depends only upon i {\displaystyle i} , j {\displaystyle j} and t {\displaystyle t} . This then allows us to write that probability as p i j ( t ) {\displaystyle p_{ij}(t)} . Theorem: Continuous-time transition matrices satisfy: P ( t + τ ) = P ( t ) P ( τ ) {\displaystyle P(t+\tau )=P(t)P(\tau )} Note: There is here a possible confusion between two meanings of the word transition. (i) In the context of Markov chains, transition is the general term for the change between two states. (ii) In the context of nucleotide changes in DNA sequences, transition is a specific term for the exchange between either the two purines (A ↔ G) or the two pyrimidines (C ↔ T) (for additional details, see the article about transitions in genetics). By contrast, an exchange between one purine and one pyrimidine is called a transversion. === Deriving the dynamics of substitution === Consider a DNA sequence of fixed length m evolving in time by base replacement. Assume that the processes followed by the m sites are Markovian independent, identically distributed and that the process is constant over time. For a particular site, let E = { A , G , C , T } {\displaystyle {\mathcal {E}}=\{A,\,G,\,C,\,T\}} be the set of possible states for the site, and p ( t ) = ( p A ( t ) , p G ( t ) , p C ( t ) , p T ( t ) ) {\displaystyle \mathbf {p} (t)=(p_{A}(t),\,p_{G}(t),\,p_{C}(t),\,p_{T}(t))} their respective probabilities at time t {\displaystyle t} . For two distinct x , y ∈ E {\displaystyle x,y\in {\mathcal {E}}} , let μ x y {\displaystyle \mu _{xy}\ } be the transition rate from state x {\displaystyle x} to state y {\displaystyle y} . Similarly, for any x {\displaystyle x} , let the total rate of change from x {\displaystyle x} be μ x = ∑ y ≠ x μ x y . {\displaystyle \mu _{x}=\sum _{y\neq x}\mu _{xy}\,.} The changes in the probability distribution p A ( t ) {\displaystyle p_{A}(t)} for small increments of time Δ t {\displaystyle \Delta t} are given by p A ( t + Δ t ) = p A ( t ) − p A ( t ) μ A Δ t + ∑ x ≠ A p x ( t ) μ x A Δ t . {\displaystyle p_{A}(t+\Delta t)=p_{A}(t)-p_{A}(t)\mu _{A}\Delta t+\sum _{x\neq A}p_{x}(t)\mu _{xA}\Delta t\,.} In other words, (in frequentist language), the frequency of A {\displaystyle A} 's at time t + Δ t {\displaystyle t+\Delta t} is equal to the frequency at time t {\displaystyle t} minus the frequency of the lost A {\displaystyle A} 's plus the frequency of the newly created A {\displaystyle A} 's. Similarly for the probabilities p G ( t ) {\displaystyle p_{G}(t)} , p C ( t ) {\displaystyle p_{C}(t)} and p T ( t ) {\displaystyle p_{T}(t)} . These equations can be written compactly as p ( t + Δ t ) = p ( t ) + p ( t ) Q Δ t , {\displaystyle \mathbf {p} (t+\Delta t)=\mathbf {p} (t)+\mathbf {p} (t)Q\Delta t\,,} where Q = ( − μ A μ A G μ A C μ A T μ G A − μ G μ G C μ G T μ C A μ C G − μ C μ C T μ T A μ T G μ T C − μ T ) {\displaystyle Q={\begin{pmatrix}-\mu _{A}&\mu _{AG}&\mu _{AC}&\mu _{AT}\\\mu _{GA}&-\mu _{G}&\mu _{GC}&\mu _{GT}\\\mu _{CA}&\mu _{CG}&-\mu _{C}&\mu _{CT}\\\mu _{TA}&\mu _{TG}&\mu _{TC}&-\mu _{T}\end{pmatrix}}} is known as the rate matrix. Note that, by definition, the sum of the entries in each row of Q {\displaystyle Q} is equal to zero. It follows that p ′ ( t ) = p ( t ) Q . {\displaystyle \mathbf {p} '(t)=\mathbf {p} (t)Q\,.} For a stationary process, where Q {\displaystyle Q} does not depend on time t, this differential equation can be solved. First, P ( t ) = exp ⁡ ( t Q ) , {\displaystyle P(t)=\exp(tQ),} where exp ⁡ ( t Q ) {\displaystyle \exp(tQ)} denotes the exponential of the matrix t Q {\displaystyle tQ} . As a result, p ( t ) = p ( 0 ) P ( t ) = p ( 0 ) exp ⁡ ( t Q ) . {\displaystyle \mathbf {p} (t)=\mathbf {p} (0)P(t)=\mathbf {p} (0)\exp(tQ)\,.} === Ergodicity === If the Markov chain is irreducible, i.e. if it is always possible to go from a state x {\displaystyle x} to a state y {\displaystyle y} (possibly in several steps), then it is also ergodic. As a result, it has a unique stationary distribution π = { π x , x ∈ E } {\displaystyle {\boldsymbol {\pi }}=\{\pi _{x},\,x\in {\mathcal {E}}\}} , where π x {\displaystyle \pi _{x}} corresponds to the proportion of time spent in state x {\displaystyle x} after the Markov chain has run for an infinite amount of time. In DNA evo

Katie Bouman

Katherine Louise Bouman (; born 1989) is an American engineer and computer scientist working in the field of computational imaging. She led the development of an algorithm for imaging black holes, known as Continuous High-resolution Image Reconstruction using Patch priors (CHIRP), and was a member of the Event Horizon Telescope team that captured the first image of a black hole. The California Institute of Technology, which hired Bouman as an assistant professor in June 2019, awarded her a named professorship in 2020. In 2021, asteroid 291387 Katiebouman was named after her. In 2024, she became an associate professor. == Early life and education == Bouman grew up in West Lafayette, Indiana. Her father, Charles Bouman, is a professor of electrical and computer engineering and biomedical engineering at Purdue University. As a high school student, Bouman conducted imaging research at Purdue University. She graduated from West Lafayette Junior-Senior High School in 2007. Bouman studied electrical engineering at the University of Michigan and graduated summa cum laude in 2011. She earned her master's degree in 2013 and obtained a doctoral degree in electrical engineering and computer science in 2017 from the Massachusetts Institute of Technology (MIT). At MIT, she was a member of the MIT Computer Science and Artificial Intelligence Laboratory (CSAIL). This group also worked closely with MIT's Haystack Observatory and with the Event Horizon Telescope. She was supported by a National Science Foundation Graduate Fellowship. Her master's thesis, Estimating Material Properties of Fabric through the Observation of Motion, was awarded the Ernst Guillemin Award for best Master's Thesis in electrical engineering. Her Ph.D. dissertation, Extreme imaging via physical model inversion: seeing around corners and imaging black holes, was supervised by William T. Freeman. Prior to receiving her doctoral degree, Bouman delivered a TEDx talk, How to Take a Picture of a Black Hole, which explained algorithms that could be used to capture the first image of a black hole. == Research and career == After earning her doctorate, Bouman joined Harvard University as a postdoctoral fellow on the Event Horizon Telescope Imaging team. Bouman joined Event Horizon Telescope project in 2013. She led the development of an algorithm for imaging black holes, known as Continuous High-resolution Image Reconstruction using Patch priors (CHIRP). CHIRP inspired image validation procedures used in acquiring the first image of a black hole in April 2019, and Bouman played a significant role in the project by verifying images, selecting parameters for filtering images taken by the Event Horizon Telescope, and participating in the development of a robust imaging framework that compared the results of different image reconstruction techniques. Her group is analyzing the Event Horizon Telescope's images to learn more about general relativity in a strong gravitational field. Bouman received significant media attention after a photo, showing her reaction to the detection of the black hole shadow in the EHT images, went viral. Some people in the media and on the Internet misleadingly implied that Bouman was a "lone genius" behind the image. However, Bouman herself repeatedly noted that the result came from the work of a large collaboration, showing the importance of teamwork in science. Bouman also became the target of online harassment, to the extent that her colleague Andrew Chael made a statement on Twitter criticizing "awful and sexist attacks on my colleague and friend", including attempts to undermine her contributions by crediting him solely with work accomplished by the team. Bouman joined the California Institute of Technology (Caltech) as an assistant professor in June 2019, where she works on new systems for computational imaging using computer vision and machine learning. In 2024, she was promoted to associate professor of computing and mathematical sciences, electrical engineering and astronomy as well as a Rosenberg Scholar. Bouman received a named professorship at Caltech in 2020. In 2021, Bouman was awarded the Royal Photographic Society Progress Medal and Honorary Fellowship. == Recognition == She was recognized as one of the BBC's 100 women of 2019. In 2024, Bouman was awarded a Sloan Research Fellowship.

Centurion Guard

Centurion Guard is a PC hardware and software-based security product, developed by Centurion Technologies. It was first released in 1996. There were several different releases and versions of this product, and many were distributed in computers donated to libraries by the Bill & Melinda Gates Foundation. == Operating system compatibility == Microsoft Windows 7 Microsoft Windows Vista Microsoft Windows XP

Best AI Pair Programmers in 2026

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